STRINGSTRING
R2601_21552 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21552" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21552Uncharacterized protein (320 aa)    
Predicted Functional Partners:
R2601_21562
ABC transporter permease protein (277 aa)
 
          0.901
R2601_21557
ABC transporter ATP-binding protein (272 aa)
 
          0.893
R2601_21567
Uncharacterized protein (383 aa)
              0.841
R2601_21572
Regulatory protein, LacI-Periplasmic binding protein/LacI transcriptional regulator (342 aa)
 
          0.641
R2601_00620
Uncharacterized protein (337 aa)
   
          0.529
R2601_18273
Uncharacterized protein (455 aa)
   
          0.445
prfB
Peptide chain release factor 2 ; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (373 aa)
              0.406
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]