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R2601_21572 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21572" - Regulatory protein, LacI:Periplasmic binding protein/LacI transcriptional regulator in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21572Regulatory protein, LacI-Periplasmic binding protein/LacI transcriptional regulator (342 aa)    
Predicted Functional Partners:
R2601_05318
Transcriptional regulator, LacI family protein (343 aa)
   
          0.775
R2601_11769
Transcriptional regulator, LacI family protein (318 aa)
   
          0.772
R2601_21567
Uncharacterized protein (383 aa)
 
          0.696
R2601_21552
Uncharacterized protein (320 aa)
 
          0.641
R2601_21562
ABC transporter permease protein (277 aa)
              0.611
R2601_21557
ABC transporter ATP-binding protein (272 aa)
              0.611
prfB
Peptide chain release factor 2 ; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (373 aa)
              0.564
R2601_27091
Transcriptional regulator, DeoR family protein (255 aa)
   
          0.475
R2601_21582
Putative phospholipase D protein (525 aa)
              0.423
R2601_13344
Transcriptional regulator, DeoR family protein (257 aa)
   
          0.414
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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