STRINGSTRING
R2601_21587 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21587" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21587Uncharacterized protein (268 aa)    
Predicted Functional Partners:
R2601_18518
Possible flagellar switch protein FliM (396 aa)
   
          0.595
R2601_17784
Saccharopine dehydrogenase, putative (376 aa)
   
          0.556
R2601_21582
Putative phospholipase D protein (525 aa)
              0.543
R2601_05158
Uncharacterized protein (171 aa)
   
          0.515
R2601_21231
Uncharacterized protein (109 aa)
   
          0.504
R2601_13204
Uncharacterized protein (124 aa)
   
          0.498
R2601_13554
Uncharacterized protein (109 aa)
   
          0.466
R2601_14510
Uncharacterized protein (125 aa)
   
          0.448
prfB
Peptide chain release factor 2 ; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (373 aa)
              0.440
R2601_27056
Uncharacterized protein (148 aa)
   
          0.424
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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