STRINGSTRING
R2601_21657 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21657" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21657Uncharacterized protein (398 aa)    
Predicted Functional Partners:
R2601_21662
Uncharacterized protein (185 aa)
              0.887
R2601_21652
Uncharacterized protein (632 aa)
              0.856
R2601_21667
Iron ABC transporter, ATP-binding protein, putative (359 aa)
   
        0.615
R2601_07748
RNA methyltransferase, TrmH family, group 3 (259 aa)
   
      0.601
R2601_19255
Uncharacterized protein (367 aa)
   
 
  0.579
R2601_15447
DNA polymerase I (935 aa)
   
      0.574
R2601_15265
Aminomethyltransferase ; The glycine cleavage system catalyzes the degradation of glycine (375 aa)
 
 
    0.496
R2601_08998
Threonine synthase (463 aa)
   
        0.462
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
    0.452
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (279 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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