STRINGSTRING
R2601_21802 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21802" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21802Uncharacterized protein (117 aa)    
Predicted Functional Partners:
R2601_21807
Uncharacterized protein (140 aa)
 
          0.873
R2601_21792
NADH dehydrogenase-ubiquinone oxidoreductase, chain F (431 aa)
              0.856
R2601_21787
Uncharacterized protein (87 aa)
              0.851
R2601_21797
Uncharacterized protein (150 aa)
              0.850
R2601_18173
Uncharacterized protein (447 aa)
   
          0.778
R2601_25206
Uncharacterized protein (586 aa)
   
          0.777
R2601_25371
Tellurite resistance protein (134 aa)
   
          0.773
R2601_25896
Uncharacterized protein (49 aa)
   
          0.772
R2601_11169
Uncharacterized protein (80 aa)
   
          0.771
R2601_26241
Lipoprotein, putative (202 aa)
   
          0.770
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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