STRINGSTRING
R2601_21887 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21887" - DNA binding protein, putative in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21887DNA binding protein, putative (189 aa)    
Predicted Functional Partners:
kbl
Glycine acetyltransferase ; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA (395 aa)
 
          0.769
tdh
L-threonine 3-dehydrogenase (345 aa)
 
          0.758
R2601_21882
Metallo-beta-lactamase family protein (555 aa)
              0.689
coaX
Pantothenic acid kinase ; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (259 aa)
              0.689
R2601_21872
Biotin--acetyl-CoA-carboxylase ligase (248 aa)
              0.659
R2601_07961
DNA-binding protein, putative (212 aa)
   
          0.637
R2601_24809
DNA-binding protein, putative (206 aa)
   
          0.497
R2601_13835
AzlC family protein (234 aa)
              0.451
nuoN
NDH-1 subunit N ; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (480 aa)
              0.441
R2601_21862
NADH dehydrogenase subunit M (516 aa)
              0.431
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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