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R2601_21922 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21922" - Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21922Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein (402 aa)    
Predicted Functional Partners:
R2601_21917
Branched-chain amino acid ABC transporter, permease protein (618 aa)
   
    0.993
R2601_21912
Branched-chain amino acid ABC transporter, ATP-binding protein (256 aa)
 
   
    0.983
R2601_21907
Branched-chain amino acid ABC transporter, ATP-binding protein (233 aa)
 
   
    0.983
R2601_21932
Uncharacterized protein (192 aa)
 
          0.918
R2601_21947
Uncharacterized protein (476 aa)
 
          0.912
R2601_21937
Uncharacterized protein (194 aa)
 
          0.908
R2601_21942
Uncharacterized protein (287 aa)
 
          0.906
R2601_13479
ABC-type transport system permease protein II (Probable substrates urea/short chain-amides) (346 aa)
   
    0.875
R2601_10719
Inner-membrane translocator (306 aa)
   
    0.834
R2601_01953
Putative ABC transporter, permease protein (289 aa)
 
   
    0.830
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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