STRINGSTRING
R2601_22002 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22002" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22002Uncharacterized protein (135 aa)    
Predicted Functional Partners:
R2601_12216
Uncharacterized protein (234 aa)
   
          0.699
R2601_27193
Uncharacterized protein (903 aa)
   
          0.689
R2601_26861
Uncharacterized protein (187 aa)
   
          0.673
R2601_13915
Uncharacterized protein (182 aa)
   
          0.657
R2601_23450
Uncharacterized protein (233 aa)
   
          0.628
R2601_19614
Lipoprotein, putative (312 aa)
   
          0.617
R2601_24480
Uncharacterized protein (272 aa)
   
          0.599
R2601_21997
Adenylosuccinase (434 aa)
              0.559
R2601_22007
Uncharacterized protein (433 aa)
              0.556
R2601_11459
Uncharacterized protein (309 aa)
   
          0.526
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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