STRINGSTRING
R2601_22007 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22007" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22007Uncharacterized protein (433 aa)    
Predicted Functional Partners:
R2601_22002
Uncharacterized protein (135 aa)
              0.556
R2601_22357
Uncharacterized protein (127 aa)
   
          0.486
R2601_12473
Uncharacterized protein (342 aa)
   
          0.473
R2601_10214
Cytochrome c-type biogenesis protein CycH (412 aa)
   
          0.437
R2601_11544
Uncharacterized protein (263 aa)
   
          0.431
R2601_22517
Indolepyruvate ferredoxin oxidoreductase (1150 aa)
   
          0.415
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]