STRINGSTRING
R2601_22042 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22042" - Delta-aminolevulinate synthase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22042Delta-aminolevulinate synthase (407 aa)    
Predicted Functional Partners:
R2601_25461
Delta-aminolevulinic acid dehydratase (332 aa)
   
 
  0.983
R2601_02148
Uncharacterized protein (456 aa)
 
  0.934
R2601_20421
Aminotransferase, class III (445 aa)
 
  0.934
R2601_11394
Uncharacterized protein (454 aa)
 
  0.933
R2601_18108
Uncharacterized protein (460 aa)
 
  0.932
R2601_26696
Uncharacterized protein (440 aa)
 
  0.931
R2601_26101
Uncharacterized protein (456 aa)
 
  0.929
R2601_10914
Taurine--pyruvate aminotransferase (462 aa)
 
  0.929
R2601_13269
Uncharacterized protein (466 aa)
 
 
  0.919
hemE
Uroporphyrinogen decarboxylase ; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (343 aa)
 
   
  0.900
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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