STRINGSTRING
R2601_22192 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22192" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22192Uncharacterized protein (360 aa)    
Predicted Functional Partners:
R2601_22197
Peptidase C14, caspase catalytic subunit p20 (491 aa)
 
          0.878
R2601_16020
Uncharacterized protein (465 aa)
 
          0.757
R2601_22117
Possible outer membrane protein, OmpA family (452 aa)
 
          0.720
R2601_08766
OmpA family protein (194 aa)
   
          0.686
R2601_12443
Peptidoglycan-associated lipoprotein (174 aa)
   
          0.671
R2601_01823
Histidine kinase (838 aa)
   
          0.579
R2601_16040
FHA domain protein, putative (453 aa)
   
          0.544
R2601_07718
Uncharacterized protein (635 aa)
 
          0.529
R2601_16010
Uncharacterized protein (232 aa)
   
          0.499
R2601_22187
Uncharacterized protein (352 aa)
              0.491
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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