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R2601_22222 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22222" - TRAP-T family transporter, DctQ in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22222TRAP-T family transporter, DctQ (4TMs) subunit (163 aa)    
Predicted Functional Partners:
R2601_22217
TRAP-T family transporter, DctM (12TMs) subunit (423 aa)
 
   
    0.990
R2601_22227
TRAP-T family transporter, periplasmic binding protein, DctP (324 aa)
 
   
    0.990
R2601_22232
Putative regulatory protein, GntR family (241 aa)
 
          0.732
R2601_13319
Uncharacterized protein (169 aa)
   
          0.727
R2601_00580
C4-dicarboxylate transport system permease small protein (190 aa)
   
          0.727
R2601_00035
C4-dicarboxylate transport system permease small protein (170 aa)
   
          0.656
R2601_19929
Putative ABC transporter periplasmic solute-binding protein (324 aa)
   
          0.605
R2601_20341
C4-dicarboxylate transport system permease small protein (164 aa)
   
          0.582
R2601_22247
Putative altronate dehydrogenase (368 aa)
 
          0.575
R2601_02503
Uncharacterized protein (340 aa)
   
          0.531
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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