STRINGSTRING
R2601_22237 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22237" - Putative regulatory protein, GntR family in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22237Putative regulatory protein, GntR family (295 aa)    
Predicted Functional Partners:
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
 
   
  0.892
R2601_22252
Altronate hydrolase (498 aa)
 
        0.762
R2601_22232
Putative regulatory protein, GntR family (241 aa)
 
   
  0.721
R2601_22247
Putative altronate dehydrogenase (368 aa)
 
          0.714
R2601_22227
TRAP-T family transporter, periplasmic binding protein, DctP (324 aa)
 
          0.642
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
   
        0.600
R2601_06888
Probable transposase (136 aa)
   
          0.476
R2601_16745
Putative porin (351 aa)
   
          0.465
R2601_21972
Aconitate hydratase ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (923 aa)
   
        0.464
R2601_27111
Uncharacterized protein (141 aa)
   
          0.464
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]