STRINGSTRING
R2601_22297 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22297" - Putative ammonia monooxygenase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22297Putative ammonia monooxygenase (350 aa)    
Predicted Functional Partners:
R2601_22302
Putative Acetoin utilization protein (368 aa)
              0.628
R2601_24480
Uncharacterized protein (272 aa)
   
          0.575
R2601_13915
Uncharacterized protein (182 aa)
   
          0.538
R2601_26841
Uncharacterized protein (192 aa)
   
          0.520
R2601_19914
Uncharacterized protein (318 aa)
 
   
  0.513
R2601_06068
Uncharacterized protein (319 aa)
 
   
  0.509
R2601_10174
Uncharacterized protein (288 aa)
   
          0.504
R2601_00150
TctC protein (323 aa)
 
   
  0.502
R2601_09907
Uncharacterized protein (323 aa)
   
          0.495
R2601_09827
Uncharacterized protein (219 aa)
   
          0.465
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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