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R2601_22392 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22392" - C4-dicarboxylate transport sensor protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22392C4-dicarboxylate transport sensor protein (583 aa)    
Predicted Functional Partners:
R2601_22397
C4-dicarboxylate transport transcriptional regulatory protein (841 aa)
 
   
  0.999
R2601_22402
TRAP transporter, DctQ subunit (233 aa)
 
   
  0.992
R2601_22407
TRAP transporter, DctM subunit (458 aa)
 
   
  0.987
R2601_24465
C4-dicarboxylate transport transcriptional regulatory protein DctD (440 aa)
 
   
  0.962
R2601_00805
Sigma-54 dependent transcriptional regulator (434 aa)
 
   
  0.948
R2601_00160
Two-component system sensor protein (807 aa)
 
   
  0.923
R2601_05053
Sigma-54 dependent response regulator (454 aa)
 
   
  0.910
R2601_26256
Nitrogen regulation protein NtrC (457 aa)
 
   
  0.848
R2601_26246
Nitrogen assimilation regulatory protein NtrX (472 aa)
 
   
  0.843
R2601_15105
Sensory box histidine kinase/response regulator (812 aa)
   
   
  0.839
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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