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R2601_22402 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22402" - TRAP transporter, DctQ subunit in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22402TRAP transporter, DctQ subunit (233 aa)    
Predicted Functional Partners:
R2601_22407
TRAP transporter, DctM subunit (458 aa)
 
 
  0.999
R2601_22397
C4-dicarboxylate transport transcriptional regulatory protein (841 aa)
 
   
    0.994
R2601_22392
C4-dicarboxylate transport sensor protein (583 aa)
 
   
  0.992
R2601_13314
Probable C4-dicarboxylate transport system, substrate-binding protein (333 aa)
 
 
  0.883
R2601_00875
Putative periplasmic binding protein (322 aa)
 
 
  0.866
R2601_20351
TRAP-type C4-dicarboxylate transport system (342 aa)
 
 
  0.850
R2601_06038
C4-dicarboxylate transport system C4-dicarboxylate-binding protein (322 aa)
 
 
  0.839
R2601_00030
Putative ABC transporter periplasmic solute-binding protein (325 aa)
 
 
  0.833
R2601_13324
Uncharacterized protein (425 aa)
 
 
  0.832
R2601_00590
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) (321 aa)
 
 
  0.831
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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