STRINGSTRING
R2601_22427 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22427" - Mechanosensitive ion channel family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22427Mechanosensitive ion channel family protein (559 aa)    
Predicted Functional Partners:
R2601_19337
Uncharacterized protein (274 aa)
 
          0.674
R2601_22422
Transferase hexapeptide repeat protein (187 aa)
              0.653
R2601_22432
Uncharacterized protein (118 aa)
              0.637
R2601_21221
Uncharacterized protein (249 aa)
   
          0.533
R2601_12318
Uncharacterized protein (71 aa)
   
          0.512
R2601_16370
Uncharacterized protein (280 aa)
   
          0.511
R2601_25291
Uncharacterized protein (261 aa)
   
          0.494
R2601_22417
Iron-sulfur cluster assembly accessory protein (126 aa)
              0.489
R2601_14385
Probable exopolysaccharide synthesis protein (197 aa)
   
          0.477
R2601_27071
Lipoprotein, putative (183 aa)
   
          0.473
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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