STRINGSTRING
R2601_22457 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22457" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22457Uncharacterized protein (200 aa)    
Predicted Functional Partners:
R2601_23830
DNA-binding response regulator CtrA (179 aa)
   
 
  0.969
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
   
   
  0.884
R2601_24120
DNA-binding response regulator CtrA (57 aa)
   
 
  0.884
R2601_16885
DNA-binding response regulator ChvI (233 aa)
   
 
  0.775
R2601_22462
Uncharacterized protein (60 aa)
              0.757
R2601_14970
Uncharacterized protein (497 aa)
   
          0.732
R2601_10374
SlyX protein, putative (68 aa)
   
          0.718
R2601_09420
Chemotaxis protein methyltransferase ; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP (289 aa)
       
  0.692
R2601_18715
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase (1154 aa)
       
  0.687
R2601_24944
Phosphate regulon transcriptional regulatory protein PhoB (229 aa)
       
  0.677
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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