STRINGSTRING
R2601_22462 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22462" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22462Uncharacterized protein (60 aa)    
Predicted Functional Partners:
R2601_22457
Uncharacterized protein (200 aa)
              0.757
R2601_08686
Uncharacterized protein (116 aa)
   
          0.730
R2601_22467
Uncharacterized protein (252 aa)
 
          0.660
R2601_22472
Acyltransferase, putative (274 aa)
 
          0.651
R2601_13594
Uncharacterized protein (59 aa)
   
          0.592
R2601_15567
ABC transporter, permease protein (276 aa)
   
          0.577
R2601_18568
Uncharacterized protein (293 aa)
   
          0.564
R2601_08928
Helicase, putative (989 aa)
   
          0.564
R2601_09225
Uncharacterized protein (241 aa)
   
          0.563
R2601_10374
SlyX protein, putative (68 aa)
   
          0.551
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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