STRINGSTRING
R2601_22571 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22571" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22571Uncharacterized protein (39 aa)    
Predicted Functional Partners:
R2601_08863
Uncharacterized protein (69 aa)
   
          0.685
pth
Peptidyl-tRNA hydrolase ; The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis (241 aa)
              0.621
R2601_21031
Uncharacterized protein (131 aa)
   
          0.609
R2601_12006
Uncharacterized protein (507 aa)
   
          0.566
R2601_19225
Lipoprotein, putative (787 aa)
   
          0.520
R2601_25566
Uncharacterized protein (98 aa)
   
          0.516
R2601_24884
Uncharacterized protein (235 aa)
   
          0.514
R2601_12293
Uncharacterized protein (301 aa)
   
          0.499
R2601_22581
Uncharacterized protein (103 aa)
              0.482
R2601_11284
Uncharacterized protein (760 aa)
   
          0.481
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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