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R2601_22596 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22596" - Trimethylamine-N-oxide reductase (Cytochrome c) in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22596Trimethylamine-N-oxide reductase (Cytochrome c) (750 aa)    
Predicted Functional Partners:
R2601_05073
Formate dehydrogenase, iron-sulfur subunit, putative (197 aa)
 
  0.947
R2601_14280
Iron-sulfur cluster-binding protein (249 aa)
   
  0.934
R2601_14750
NADP-dependent malic enzyme (751 aa)
       
  0.873
R2601_10082
Malic enzyme (759 aa)
       
  0.873
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
   
 
  0.846
R2601_05068
Formate dehydrogenase, gamma subunit (404 aa)
   
  0.846
R2601_16335
Uncharacterized protein (557 aa)
       
  0.835
R2601_12990
Glutamate synthase, large subunit (1537 aa)
         
  0.826
R2601_14275
Dimethyl sulfoxide reductase, C subunit, putative (289 aa)
   
  0.792
R2601_05153
Formate dehydrogenase accessory protein FdhD (287 aa)
 
 
  0.786
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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