STRINGSTRING
R2601_22656 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22656" - Nickel/cobalt efflux system in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22656Nickel/cobalt efflux system (308 aa)    
Predicted Functional Partners:
R2601_22651
Uncharacterized protein (76 aa)
              0.859
R2601_09083
Uncharacterized protein (165 aa)
   
          0.670
R2601_22661
MATE efflux family protein (454 aa)
              0.646
R2601_09088
GDSL-like lipase/acylhydrolase, putative (233 aa)
   
          0.639
R2601_00475
Uncharacterized protein (274 aa)
   
          0.599
R2601_16420
Integral membrane protein (282 aa)
   
          0.576
R2601_08466
Uncharacterized protein (77 aa)
   
          0.543
R2601_27136
ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA (300 aa)
 
          0.521
R2601_27171
Uncharacterized protein (336 aa)
   
          0.520
R2601_15527
Uncharacterized protein (475 aa)
   
          0.499
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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