STRINGSTRING
R2601_22701 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_22701" - Fumarylacetoacetate hydrolase family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_22701Fumarylacetoacetate hydrolase family protein (280 aa)    
Predicted Functional Partners:
R2601_00255
FAD linked oxidase (946 aa)
   
 
    0.826
R2601_06248
Maleylacetoacetate isomerase (209 aa)
   
 
  0.687
R2601_04053
Short-chain dehydrogenase/reductase SDR (266 aa)
       
    0.660
R2601_16555
Ureidoglycolate lyase (165 aa)
     
 
  0.659
R2601_01320
Ureidoglycolate lyase (159 aa)
     
 
  0.659
fumC
Fumarate hydratase class II (464 aa)
   
    0.658
R2601_01748
Putative dehydrogenase protein (305 aa)
   
 
    0.648
R2601_00055
Putative dehydrogenase protein (309 aa)
   
 
    0.648
R2601_17664
Serine--glyoxylate transaminase, putative (399 aa)
     
 
    0.643
R2601_22242
Putative Zn-dependent dehydrogenase (334 aa)
   
    0.640
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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