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R2601_23133 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23133" - C4-dicarboxylate transport system C4-dicarboxylate-binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23133C4-dicarboxylate transport system C4-dicarboxylate-binding protein (333 aa)    
Predicted Functional Partners:
R2601_23123
TRAP-type C4-dicarboxylate transport system, large permease component (428 aa)
 
  0.998
R2601_00075
Putative permease protein (430 aa)
 
 
  0.904
R2601_20596
Uncharacterized protein (425 aa)
 
 
  0.903
R2601_01010
TRAP dicarboxylate transporter, DctM subunit (425 aa)
 
  0.903
R2601_00040
DctMQ fusion protein (C4-dicarboxylate transporter) (428 aa)
 
  0.902
R2601_00585
DctMQ fusion protein (C4-dicarboxylate transporter) (425 aa)
 
  0.901
R2601_22217
TRAP-T family transporter, DctM (12TMs) subunit (423 aa)
 
 
  0.901
R2601_06028
Uncharacterized protein (414 aa)
 
 
  0.900
R2601_00885
Putative transmembrane protein (418 aa)
 
  0.900
R2601_13324
Uncharacterized protein (425 aa)
 
 
  0.898
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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