STRINGSTRING
R2601_23138 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23138" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23138Uncharacterized protein (269 aa)    
Predicted Functional Partners:
R2601_14255
Creatinase (400 aa)
       
    0.955
R2601_00530
Uncharacterized protein (407 aa)
       
    0.759
R2601_23133
C4-dicarboxylate transport system C4-dicarboxylate-binding protein (333 aa)
 
          0.721
R2601_23128
Uncharacterized protein (187 aa)
              0.659
R2601_23123
TRAP-type C4-dicarboxylate transport system, large permease component (428 aa)
              0.659
R2601_16485
Cytosine deaminase (429 aa)
       
    0.647
R2601_23118
4-hydroxy-4-methyl-2-oxoglutarate aldolase, putative (225 aa)
 
          0.632
R2601_23113
Putative LysR-family transcriptional regulator (303 aa)
   
          0.557
R2601_12046
Xaa-Pro aminopeptidase (417 aa)
       
    0.552
R2601_10149
Peptidase, M24 family protein (398 aa)
       
    0.552
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]