STRINGSTRING
R2601_23143 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23143" - Oxidoreductase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23143Oxidoreductase (415 aa)    
Predicted Functional Partners:
R2601_23148
Agropine synthesis reductase (238 aa)
              0.863
R2601_23153
ABC transporter, ATP-binding protein (339 aa)
              0.859
R2601_23163
Binding-protein-dependent transport systems inner membrane component (308 aa)
              0.859
R2601_23158
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein (618 aa)
              0.859
R2601_23168
Oligopeptide ABC transporter oligopeptide-binding protein (506 aa)
              0.719
R2601_02168
Haloalkanoic acid dehalogenase (221 aa)
 
          0.699
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
 
   
    0.683
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
 
   
    0.675
R2601_02153
Uncharacterized protein (277 aa)
 
          0.650
R2601_02133
Probable oligopeptide ABC transporter, substrate-binding protein (536 aa)
 
          0.636
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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