STRINGSTRING
R2601_23148 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23148" - Agropine synthesis reductase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23148Agropine synthesis reductase (238 aa)    
Predicted Functional Partners:
R2601_23163
Binding-protein-dependent transport systems inner membrane component (308 aa)
 
          0.880
R2601_23143
Oxidoreductase (415 aa)
              0.863
R2601_23158
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein (618 aa)
              0.859
R2601_23153
ABC transporter, ATP-binding protein (339 aa)
              0.859
R2601_03553
Short-chain dehydrogenase/reductase SDR (255 aa)
 
          0.774
R2601_01050
3-oxoacyl-(Acyl-carrier-protein) reductase (271 aa)
 
          0.774
R2601_06098
3-ketoacyl-(Acyl-carrier-protein) reductase (258 aa)
 
          0.772
R2601_23168
Oligopeptide ABC transporter oligopeptide-binding protein (506 aa)
 
          0.760
R2601_11114
7-alpha-hydroxysteroid dehydrogenase, putative (266 aa)
   
          0.747
R2601_01973
Short chain dehydrogenase (241 aa)
 
          0.740
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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