Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Transcriptional regulator, LuxR family protein (175 aa)
Predicted Functional Partners:
Cytochrome b, putative (179 aa)
Uncharacterized protein (59 aa)
Pseudouridine-5’-phosphate glycosidase ; Catalyzes the reversible cleavage of pseudouridine 5’- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway (305 aa)
Uncharacterized protein (81 aa)
Glyceraldehyde-3-phosphate dehydrogenase (333 aa)
Uncharacterized protein (760 aa)
DNA-binding response regulator, LuxR family protein (234 aa)
DNA-binding response regulator, LuxR family protein (214 aa)
Response regulator (119 aa)
DNA-binding response regulator, LuxR family protein (204 aa)
Your Current Organism:
NCBI taxonomy Id: 314265 Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601