STRINGSTRING
R2601_23388 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23388" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23388Uncharacterized protein (158 aa)    
Predicted Functional Partners:
R2601_18303
Uncharacterized protein (258 aa)
   
          0.778
R2601_24120
DNA-binding response regulator CtrA (57 aa)
   
          0.776
R2601_18563
Uncharacterized protein (86 aa)
   
          0.776
R2601_16900
Uncharacterized protein (166 aa)
   
          0.771
R2601_14945
ATP-dependent DNA helicase, UvrD/Rep family protein (1125 aa)
   
          0.769
R2601_14950
Uncharacterized protein (976 aa)
   
          0.767
R2601_16575
Glutathione S-transferase family protein (221 aa)
   
          0.752
R2601_26891
Uncharacterized protein (217 aa)
   
          0.751
rpsU
30S ribosomal protein S21 (68 aa)
   
          0.736
R2601_15497
Exonuclease, putative (204 aa)
   
          0.724
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]