STRINGSTRING
R2601_23485 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23485" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23485Uncharacterized protein (250 aa)    
Predicted Functional Partners:
R2601_23480
Protein-export membrane protein SecF ; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (156 aa)
              0.866
R2601_23490
Uncharacterized protein (117 aa)
              0.848
R2601_11459
Uncharacterized protein (309 aa)
   
          0.700
R2601_09013
Uncharacterized protein (275 aa)
 
          0.661
R2601_21256
Possible outer membrane protein (199 aa)
   
          0.647
R2601_09492
Putative binding protein dependent transport lipoprotein (450 aa)
   
          0.623
R2601_05768
Uncharacterized protein (250 aa)
   
          0.615
R2601_23500
Heme exporter protein B ; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (218 aa)
              0.612
ccmA
Heme exporter protein A ; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (204 aa)
              0.612
R2601_15225
Uncharacterized protein (308 aa)
 
     
  0.564
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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