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R2601_23625 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23625" - TRAP-type C4-dicarboxylate transport system, large permease component in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23625TRAP-type C4-dicarboxylate transport system, large permease component (426 aa)    
Predicted Functional Partners:
R2601_23620
Uncharacterized protein (169 aa)
 
   
    0.996
R2601_23615
Putative extracellular solute-binding protein (336 aa)
 
 
  0.987
R2601_20386
TRAP-type C4-dicarboxylate transport system, periplasmic component (348 aa)
 
 
  0.967
R2601_02208
Uncharacterized protein (326 aa)
 
 
  0.920
R2601_03393
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein (369 aa)
 
 
  0.899
R2601_00590
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) (321 aa)
 
  0.883
R2601_00030
Putative ABC transporter periplasmic solute-binding protein (325 aa)
 
  0.878
R2601_13314
Probable C4-dicarboxylate transport system, substrate-binding protein (333 aa)
 
  0.875
R2601_03828
Uncharacterized protein (335 aa)
 
 
  0.875
R2601_05353
Uncharacterized protein (333 aa)
 
 
  0.861
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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