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R2601_23660 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23660" - Metallopeptidase, family M24 in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23660Metallopeptidase, family M24 (591 aa)    
Predicted Functional Partners:
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
  0.948
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
  0.948
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
  0.932
R2601_23655
Uncharacterized protein (113 aa)
              0.753
R2601_15447
DNA polymerase I (935 aa)
   
   
  0.683
R2601_15265
Aminomethyltransferase ; The glycine cleavage system catalyzes the degradation of glycine (375 aa)
   
  0.641
R2601_07971
Probable glycine cleavage system T protein (811 aa)
   
  0.641
R2601_23670
Cobalt chelatase, pCobT subunit (625 aa)
              0.624
R2601_16335
Uncharacterized protein (557 aa)
 
 
  0.601
R2601_07786
N utilization substance protein B homolog ; Involved in the transcription termination process (163 aa)
 
   
  0.587
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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