STRINGSTRING
R2601_23690 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23690" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23690Uncharacterized protein (232 aa)    
Predicted Functional Partners:
R2601_23685
RNA polymerase sigma-70 factor (185 aa)
 
          0.980
R2601_12248
RNA polymerase sigma-70 factor (181 aa)
 
          0.861
R2601_08046
Uncharacterized protein (184 aa)
 
          0.663
R2601_23680
Cobalt chelatase, CobS small subunit (327 aa)
              0.615
R2601_18273
Uncharacterized protein (455 aa)
   
          0.541
R2601_21221
Uncharacterized protein (249 aa)
   
          0.529
R2601_11494
Predicted membrane protein (401 aa)
   
          0.529
R2601_16987
Uncharacterized protein (287 aa)
   
          0.480
R2601_20169
Transcriptional regulator (182 aa)
   
          0.454
R2601_21261
Uncharacterized protein (150 aa)
   
          0.442
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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