STRINGSTRING
R2601_23835 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23835" - Integrase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23835Integrase (335 aa)    
Predicted Functional Partners:
R2601_09792
Antibiotic biosynthesis monooxygenase domain protein (116 aa)
   
          0.538
R2601_23845
Uncharacterized protein (82 aa)
              0.514
R2601_23840
Bacteriophage phi 1.45 protein-like protein (209 aa)
              0.514
R2601_27193
Uncharacterized protein (903 aa)
   
          0.513
R2601_10007
Uncharacterized protein (370 aa)
   
          0.471
R2601_21256
Possible outer membrane protein (199 aa)
   
          0.456
R2601_00800
Replication protein, putative (365 aa)
   
          0.448
R2601_01913
TRAP-T family transporter, periplasmic binding protein (124 aa)
   
          0.430
R2601_20199
Uncharacterized protein (506 aa)
   
          0.416
R2601_15792
Phage integrase (347 aa)
   
          0.416
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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