STRINGSTRING
R2601_23885 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23885" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23885Uncharacterized protein (145 aa)    
Predicted Functional Partners:
R2601_23880
Uncharacterized protein (305 aa)
              0.685
R2601_14795
Uncharacterized protein (246 aa)
   
          0.638
R2601_23890
Uncharacterized protein (96 aa)
              0.568
R2601_18043
Uncharacterized protein (304 aa)
   
          0.550
R2601_14010
Uncharacterized protein (225 aa)
   
          0.534
R2601_18038
MobC protein (203 aa)
   
          0.487
R2601_22616
Major facilitator superfamily (MFS) transporter (382 aa)
   
          0.451
R2601_08211
Uncharacterized protein (196 aa)
   
          0.449
R2601_22911
Uncharacterized protein (372 aa)
   
          0.427
R2601_27071
Lipoprotein, putative (183 aa)
   
          0.417
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]