STRINGSTRING
R2601_23965 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_23965" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_23965Uncharacterized protein (124 aa)    
Predicted Functional Partners:
R2601_23960
Periplasmic serine protease (457 aa)
 
          0.955
R2601_23945
Prophage LambdaW4, terminase large subunit, putative (670 aa)
 
          0.953
R2601_23955
Bacteriophage capsid structural protein (533 aa)
 
          0.950
R2601_23970
Uncharacterized protein (345 aa)
 
          0.949
R2601_22861
Uncharacterized protein (345 aa)
 
          0.872
R2601_22871
Periplasmic serine protease (457 aa)
 
          0.861
R2601_22886
Prophage LambdaW1, terminase large subunit, putative (670 aa)
 
          0.856
R2601_23985
Uncharacterized protein (221 aa)
 
          0.855
R2601_22876
Bacteriophage capsid structural protein (533 aa)
 
          0.846
R2601_23995
Uncharacterized protein (323 aa)
 
          0.767
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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