STRINGSTRING
R2601_24115 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24115" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24115Uncharacterized protein (287 aa)    
Predicted Functional Partners:
R2601_14195
Cation antiporter (Na+/Ca2+) (342 aa)
   
          0.686
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
         
  0.515
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
        0.464
R2601_17279
ATPase, E1-E2 type (915 aa)
   
        0.461
R2601_15507
Uncharacterized protein (165 aa)
         
  0.459
R2601_15522
PTS IIA-like nitrogen-regulatory protein PtsN (154 aa)
         
  0.458
R2601_24110
Uncharacterized protein (412 aa)
              0.428
R2601_11234
Short chain dehydrogenase (263 aa)
              0.424
R2601_23960
Periplasmic serine protease (457 aa)
              0.414
R2601_22871
Periplasmic serine protease (457 aa)
              0.414
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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