STRINGSTRING
R2601_24200 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24200" - CvpA family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24200CvpA family protein (190 aa)    
Predicted Functional Partners:
R2601_24205
DNA repair protein radA ; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (454 aa)
              0.790
R2601_17629
Uncharacterized protein (109 aa)
   
          0.728
R2601_23525
Uncharacterized protein (99 aa)
   
          0.718
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.659
R2601_21807
Uncharacterized protein (140 aa)
   
          0.648
R2601_18228
Uncharacterized protein (169 aa)
   
          0.611
R2601_10879
Uncharacterized protein (71 aa)
   
          0.606
R2601_24210
Uncharacterized protein (285 aa)
              0.570
R2601_24460
C4-dicarboxylate transport sensor protein DctB, putative (567 aa)
   
          0.544
R2601_14650
Transporter, Tim44 family protein (219 aa)
   
          0.543
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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