STRINGSTRING
R2601_24235 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24235" - Membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24235Membrane protein (260 aa)    
Predicted Functional Partners:
R2601_24225
ABC transporter, ATP-binding protein (255 aa)
 
 
  0.990
R2601_18433
Uncharacterized protein (149 aa)
 
  0.983
R2601_15727
ABC transporter, ATPase subunit (263 aa)
 
 
  0.979
R2601_15732
Putative ABC transporter, periplasmic substrate-binding protein (579 aa)
 
  0.955
R2601_24240
Alanine racemase ; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (345 aa)
 
        0.937
R2601_11951
Toluene tolerance family protein (200 aa)
 
   
    0.919
R2601_24245
Replicative DNA helicase ; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins (494 aa)
   
        0.817
R2601_15512
ABC transporter, ATP-binding protein (252 aa)
 
   
    0.653
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (756 aa)
 
        0.626
R2601_11946
Putative lipoprotein (237 aa)
 
     
  0.598
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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