STRINGSTRING
lptD protein (Pelagibaca bermudensis) - STRING interaction network
"lptD" - LPS-assembly protein LptD in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDLPS-assembly protein LptD ; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (727 aa)    
Predicted Functional Partners:
R2601_24340
Permease, YjgP/YjgQ family protein (364 aa)
 
  0.982
R2601_24345
Predicted permease (371 aa)
 
  0.968
R2601_24330
Peptidylprolyl isomerase (408 aa)
 
   
  0.967
R2601_15507
Uncharacterized protein (165 aa)
 
  0.887
R2601_24325
4-(phosphohydroxy)-L-threonine dehydrogenase ; Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) (320 aa)
   
        0.869
R2601_24355
DNA polymerase III subunit chi (152 aa)
 
          0.860
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
 
   
  0.805
pepA
Leucyl aminopeptidase ; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (491 aa)
              0.776
R2601_15502
Uncharacterized protein (202 aa)
   
          0.755
R2601_12006
Uncharacterized protein (507 aa)
   
          0.742
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (12%) [HD]