STRINGSTRING
R2601_24360 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24360" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24360Uncharacterized protein (193 aa)    
Predicted Functional Partners:
R2601_24365
UPF0056 membrane protein (206 aa)
              0.758
R2601_11936
Type I secretion membrane fusion protein, HlyD family (435 aa)
   
          0.537
R2601_24120
DNA-binding response regulator CtrA (57 aa)
   
        0.509
cobS
Cobalamin-5’-phosphate synthase ; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5’-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5’-phosphate (249 aa)
              0.451
R2601_10224
Uncharacterized protein (75 aa)
              0.451
R2601_06468
Nicotinate-nucleotide pyrophosphorylase (283 aa)
              0.451
R2601_24370
Regulatory protein, LysR-LysR, substrate-binding (94 aa)
              0.418
R2601_08471
Portal protein, HK97 family (399 aa)
   
          0.408
R2601_08416
Uncharacterized protein (210 aa)
   
          0.408
R2601_21341
Two component diguanylate cyclase (470 aa)
   
          0.406
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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