STRINGSTRING
R2601_24365 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24365" - UPF0056 membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24365UPF0056 membrane protein (206 aa)    
Predicted Functional Partners:
R2601_24360
Uncharacterized protein (193 aa)
              0.758
R2601_27086
Paraquat-inducible protein A (214 aa)
       
      0.751
R2601_27081
Paraquat-inducible protein A (213 aa)
       
      0.751
R2601_24370
Regulatory protein, LysR-LysR, substrate-binding (94 aa)
              0.524
R2601_24375
Probable transposase (299 aa)
              0.481
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
              0.467
R2601_24674
ABC transporter, ATP-binding protein (619 aa)
         
  0.451
R2601_13925
Dihydroorotase (427 aa)
              0.451
pyrF
OMP decarboxylase ; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP) (235 aa)
              0.451
R2601_12675
Dihydroorotate dehydrogenase (quinone) ; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (352 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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