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R2601_24370 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24370" - Regulatory protein, LysR:LysR, substrate-binding in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24370Regulatory protein, LysR-LysR, substrate-binding (94 aa)    
Predicted Functional Partners:
R2601_24375
Probable transposase (299 aa)
              0.779
R2601_02268
Putative transcriptional regulator, LysR family protein (308 aa)
   
          0.777
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
   
          0.776
R2601_27298
Transcriptional regulator, LysR family protein (314 aa)
   
          0.775
R2601_01205
Transcriptional regulator (309 aa)
   
          0.775
R2601_22512
Transcriptional regulator, LysR family protein (301 aa)
   
          0.730
R2601_19869
Probable transcription regulator protein (298 aa)
   
          0.648
R2601_16415
Transcriptional regulator, LysR family protein (293 aa)
   
          0.646
R2601_02253
Transcriptional regulatory protein (297 aa)
   
          0.617
R2601_18663
Probable LysR-family transcriptional activator (290 aa)
   
          0.603
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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