STRINGSTRING
R2601_24375 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24375" - Probable transposase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24375Probable transposase (299 aa)    
Predicted Functional Partners:
R2601_10269
ISSpo9, transposase (243 aa)
          0.782
R2601_24370
Regulatory protein, LysR-LysR, substrate-binding (94 aa)
              0.779
R2601_27338
No annotation available (221 aa)
 
          0.778
R2601_26791
ISSpo9, transposase (184 aa)
 
          0.778
R2601_06533
ISSpo9, transposase (45 aa)
   
          0.776
R2601_24365
UPF0056 membrane protein (206 aa)
              0.481
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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