STRINGSTRING
R2601_24435 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24435" - Uncharacterized protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24435Uncharacterized protein (104 aa)    
Predicted Functional Partners:
purC
SAICAR synthetase (253 aa)
              0.742
R2601_10579
Copper-translocating P-type ATPase (146 aa)
   
          0.691
purS
Phosphoribosylformylglycinamidine synthase subunit III ; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought t [...] (76 aa)
              0.674
R2601_25996
Lipoprotein, SmpA/OmlA family (139 aa)
   
          0.624
R2601_16440
ATP synthase subunit C (74 aa)
       
      0.617
atpH
F-type ATPase subunit delta ; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (186 aa)
       
      0.617
R2601_13980
F-ATPase subunit alpha ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (512 aa)
       
      0.617
atpG
F-ATPase gamma subunit ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (293 aa)
       
      0.617
R2601_13970
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (474 aa)
       
      0.617
R2601_13965
F-ATPase epsilon subunit ; Produces ATP from ADP in the presence of a proton gradient across the membrane (144 aa)
       
      0.617
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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