STRINGSTRING
R2601_24699 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24699" - BioY family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24699BioY family protein (208 aa)    
Predicted Functional Partners:
R2601_05948
ABC transporter component (216 aa)
       
  0.861
R2601_05953
Cobalt transport protein (260 aa)
       
  0.700
R2601_24480
Uncharacterized protein (272 aa)
   
          0.577
R2601_24704
Uncharacterized protein (248 aa)
              0.570
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
 
        0.545
R2601_24265
Malonyl CoA-acyl carrier protein transacylase (313 aa)
 
     
  0.538
R2601_17654
Efflux ABC transporter, transmembrane ATP-binding protein (582 aa)
   
   
    0.522
R2601_22002
Uncharacterized protein (135 aa)
 
          0.504
R2601_26696
Uncharacterized protein (440 aa)
         
  0.504
R2601_26101
Uncharacterized protein (456 aa)
         
  0.504
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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