STRINGSTRING
R2601_24714 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24714" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24714Uncharacterized protein (270 aa)    
Predicted Functional Partners:
R2601_19609
D-alanyl-D-alanine carboxypeptidase (391 aa)
 
   
  0.735
R2601_11089
D-alanyl-D-alanine carboxypeptidase family protein (486 aa)
       
  0.682
R2601_26051
Beta-N-acetylhexosaminidase (335 aa)
   
 
    0.612
R2601_24709
Uncharacterized protein (253 aa)
              0.533
R2601_24719
Uncharacterized protein (283 aa)
              0.522
R2601_14115
Translocase (334 aa)
   
          0.499
R2601_10639
Beta-lactamase (625 aa)
   
 
  0.498
glmM
Phosphoglucosamine mutase ; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (447 aa)
   
 
  0.491
R2601_21126
Penicillin-binding protein (596 aa)
   
 
  0.480
R2601_24285
Predicted pyrophosphatase (278 aa)
   
        0.460
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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