STRINGSTRING
R2601_24749 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24749" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24749Uncharacterized protein (400 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
  0.987
R2601_24739
Anthranilate synthase component I (504 aa)
   
  0.899
R2601_14750
NADP-dependent malic enzyme (751 aa)
 
  0.893
R2601_10082
Malic enzyme (759 aa)
   
  0.879
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
 
  0.878
R2601_00255
FAD linked oxidase (946 aa)
   
  0.863
R2601_17719
Homoserine dehydrogenase (428 aa)
 
  0.859
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
   
 
  0.844
R2601_17913
Aspartokinase (412 aa)
   
  0.826
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
 
  0.823
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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