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pdxH protein (Pelagibaca bermudensis) - STRING interaction network
"pdxH" - Pyridoxal 5'-phosphate synthase in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
pdxHPyridoxal 5’-phosphate synthase ; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP) (201 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxine 5’-phosphate synthase ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (250 aa)
   
   
  0.995
R2601_24779
Cold shock DNA-binding domain protein (180 aa)
 
   
    0.815
R2601_24769
Enoyl-[acyl-carrier-protein] reductase [NADH] (255 aa)
              0.779
R2601_24784
Uncharacterized protein (158 aa)
              0.736
tyrS
Tyrosyl-tRNA synthetase ; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction- tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) (417 aa)
   
   
  0.653
gpt
Xanthine-guanine phosphoribosyltransferase ; Acts on guanine, xanthine and to a lesser extent hypoxanthine (174 aa)
              0.645
R2601_08711
Aldo/keto reductase (330 aa)
     
 
  0.608
R2601_23530
Phosphomethylpyrimidine kinase ThiD (259 aa)
   
 
  0.601
R2601_12585
Oxidoreductase, aldo/keto reductase family protein (346 aa)
     
 
  0.581
proB
Gamma-glutamyl kinase ; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate (368 aa)
     
 
    0.548
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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