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R2601_24849 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_24849" - Transcriptional regulator, AraC family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_24849Transcriptional regulator, AraC family protein (336 aa)    
Predicted Functional Partners:
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
 
          0.661
R2601_00730
Sarcosine oxidase, alpha subunit family protein (980 aa)
 
          0.646
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
 
          0.592
R2601_10194
Sarcosine oxidase, delta subunit family protein (107 aa)
 
          0.591
R2601_10209
Sarcosine oxidase, beta subunit family protein (414 aa)
 
          0.588
R2601_00720
Sarcosine oxidase, beta subunit family protein (416 aa)
 
          0.545
R2601_18678
Sarcosine oxidase beta subunit (360 aa)
 
          0.542
R2601_01688
Beta-lactamase-like protein (256 aa)
 
          0.522
R2601_24854
3-deoxy-7-phosphoheptulonate synthase (440 aa)
              0.508
R2601_25161
Uncharacterized protein (104 aa)
 
          0.470
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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